CDS

Accession Number TCMCG015C01122
gbkey CDS
Protein Id XP_027104985.1
Location complement(join(40007310..40007455,40007605..40007664,40008570..40008864,40008953..40009045,40009128..40009200,40009573..40009697,40010195..40010234,40010341..40010522,40011357..40011447,40012572..40012741,40013573..40013626,40014879..40015086,40015163..40015284,40015706..40015894,40016002..40016165,40016965..40017110,40017199..40017260,40017332..40017407,40017723..40017790,40017868..40018467,40018747..40018869,40019224..40019226))
Gene LOC113725811
GeneID 113725811
Organism Coffea arabica

Protein

Length 1029aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA506972
db_source XM_027249184.1
Definition replication factor C subunit 1-like isoform X1 [Coffea arabica]

EGGNOG-MAPPER Annotation

COG_category L
Description Replication factor C subunit 1
KEGG_TC -
KEGG_Module M00289        [VIEW IN KEGG]
M00295        [VIEW IN KEGG]
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko03032        [VIEW IN KEGG]
ko03400        [VIEW IN KEGG]
KEGG_ko ko:K10754        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03030        [VIEW IN KEGG]
ko03420        [VIEW IN KEGG]
ko03430        [VIEW IN KEGG]
map03030        [VIEW IN KEGG]
map03420        [VIEW IN KEGG]
map03430        [VIEW IN KEGG]
GOs GO:0000003        [VIEW IN EMBL-EBI]
GO:0000166        [VIEW IN EMBL-EBI]
GO:0000280        [VIEW IN EMBL-EBI]
GO:0000712        [VIEW IN EMBL-EBI]
GO:0000723        [VIEW IN EMBL-EBI]
GO:0000731        [VIEW IN EMBL-EBI]
GO:0001101        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003677        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005524        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005654        [VIEW IN EMBL-EBI]
GO:0005657        [VIEW IN EMBL-EBI]
GO:0005663        [VIEW IN EMBL-EBI]
GO:0005694        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006260        [VIEW IN EMBL-EBI]
GO:0006261        [VIEW IN EMBL-EBI]
GO:0006278        [VIEW IN EMBL-EBI]
GO:0006281        [VIEW IN EMBL-EBI]
GO:0006283        [VIEW IN EMBL-EBI]
GO:0006289        [VIEW IN EMBL-EBI]
GO:0006296        [VIEW IN EMBL-EBI]
GO:0006297        [VIEW IN EMBL-EBI]
GO:0006301        [VIEW IN EMBL-EBI]
GO:0006310        [VIEW IN EMBL-EBI]
GO:0006355        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006974        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0007004        [VIEW IN EMBL-EBI]
GO:0007049        [VIEW IN EMBL-EBI]
GO:0007059        [VIEW IN EMBL-EBI]
GO:0007127        [VIEW IN EMBL-EBI]
GO:0007131        [VIEW IN EMBL-EBI]
GO:0008047        [VIEW IN EMBL-EBI]
GO:0008144        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009058        [VIEW IN EMBL-EBI]
GO:0009059        [VIEW IN EMBL-EBI]
GO:0009719        [VIEW IN EMBL-EBI]
GO:0009725        [VIEW IN EMBL-EBI]
GO:0009737        [VIEW IN EMBL-EBI]
GO:0009889        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010033        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010556        [VIEW IN EMBL-EBI]
GO:0010833        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0017076        [VIEW IN EMBL-EBI]
GO:0018130        [VIEW IN EMBL-EBI]
GO:0019219        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019438        [VIEW IN EMBL-EBI]
GO:0019725        [VIEW IN EMBL-EBI]
GO:0019985        [VIEW IN EMBL-EBI]
GO:0022402        [VIEW IN EMBL-EBI]
GO:0022414        [VIEW IN EMBL-EBI]
GO:0030234        [VIEW IN EMBL-EBI]
GO:0030554        [VIEW IN EMBL-EBI]
GO:0031056        [VIEW IN EMBL-EBI]
GO:0031060        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031326        [VIEW IN EMBL-EBI]
GO:0031399        [VIEW IN EMBL-EBI]
GO:0031935        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032200        [VIEW IN EMBL-EBI]
GO:0032201        [VIEW IN EMBL-EBI]
GO:0032268        [VIEW IN EMBL-EBI]
GO:0032553        [VIEW IN EMBL-EBI]
GO:0032555        [VIEW IN EMBL-EBI]
GO:0032559        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033043        [VIEW IN EMBL-EBI]
GO:0033044        [VIEW IN EMBL-EBI]
GO:0033260        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0033683        [VIEW IN EMBL-EBI]
GO:0033993        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034645        [VIEW IN EMBL-EBI]
GO:0034654        [VIEW IN EMBL-EBI]
GO:0035639        [VIEW IN EMBL-EBI]
GO:0035825        [VIEW IN EMBL-EBI]
GO:0036094        [VIEW IN EMBL-EBI]
GO:0042221        [VIEW IN EMBL-EBI]
GO:0042276        [VIEW IN EMBL-EBI]
GO:0042592        [VIEW IN EMBL-EBI]
GO:0042769        [VIEW IN EMBL-EBI]
GO:0043085        [VIEW IN EMBL-EBI]
GO:0043167        [VIEW IN EMBL-EBI]
GO:0043168        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0044093        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044249        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044271        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044427        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0044786        [VIEW IN EMBL-EBI]
GO:0045132        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048285        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050790        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051128        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051246        [VIEW IN EMBL-EBI]
GO:0051252        [VIEW IN EMBL-EBI]
GO:0051276        [VIEW IN EMBL-EBI]
GO:0051304        [VIEW IN EMBL-EBI]
GO:0051307        [VIEW IN EMBL-EBI]
GO:0051321        [VIEW IN EMBL-EBI]
GO:0051570        [VIEW IN EMBL-EBI]
GO:0051606        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0060249        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0060968        [VIEW IN EMBL-EBI]
GO:0061982        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0065008        [VIEW IN EMBL-EBI]
GO:0065009        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0070987        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0071897        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0090305        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0097305        [VIEW IN EMBL-EBI]
GO:0097367        [VIEW IN EMBL-EBI]
GO:0098772        [VIEW IN EMBL-EBI]
GO:0098813        [VIEW IN EMBL-EBI]
GO:0140013        [VIEW IN EMBL-EBI]
GO:1901265        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901362        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1901576        [VIEW IN EMBL-EBI]
GO:1901700        [VIEW IN EMBL-EBI]
GO:1902275        [VIEW IN EMBL-EBI]
GO:1903046        [VIEW IN EMBL-EBI]
GO:1903506        [VIEW IN EMBL-EBI]
GO:2000112        [VIEW IN EMBL-EBI]
GO:2001141        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGCAGTCAGATATAAGGAAGTGGTTCATGAAGCAACATGAAAAGAGCAGCGCTGGAAATGGCAATGCTGCTAAGCCCAAAACAGCAGAGAAGCCCGCTGTCGCTGCTTCACATCTGGATGATTCGGTAAAAGAAGGGCAAGAAAGTGCCAGCAGAAGGAAAACTAGCAAATATTTTGCTTCAGATAAGCAGAACGCTAAAGATGCGAAGGAAATAGAGGAGTTTTCAGCAAAAAGGAAGGCCCCAATGGCTAGCAAGGAGATACACGGTGATGTGAAACCGCCACCAGGGAAGAAAGTGCACAAAAATGAGGATGATGATAATGATGAAGACTTTGTTGATACTACTCCAAGGAAGGTTTCTACTCCTAGCAAGAAATTAAAAAGTGGTTCTGGAAGAGGAATTGCAAGAAAGTCTGCAGATGTCGATGAAAGTGATGAGGATGATGTCATAGGGACAAAATCTCATTCAAAGCCGGCAGGAAGAGGGCGTGGTGGAAAAAGTGGGATAACAGCTCCAGGAAGCAGAAAAGGGATGGTTGTTGATGAAAGTGATGAAGATGAGCCTGGTGATAAGGAGAGTAAATCTGCTAAACCTGGTGGACGAGGCCGTGGTGGAAGAGGTTCATCAGCCACGCCAAGTGGTGGACGAGGCAGAGGTGGTGGAGGTTATGGTGGATTTATGAACTTTGGTGAAAGGAAAGATCCTCCGCATAAAGGAGAAAAGGAAATTCCTGAAGGTGCGACCGACTGTTTAACTGGTTTGACCTTTGTAATCAGTGGTACGCTGGACAGCTTGGAAAGAGAAGATGCTGAGGCCTTAATCAAACGCTATGGTGGTCGGGTTACTGGATCTGTCAGCAAAAAGACGAATTATCTTGTGTGTGATGAAGATATTGAGGGACGGAAATCTACTAAAGCAAAAGAGCTTGGGACTGCTTTTCTTACTGAGGATGGGTTGCTTGATATGATTCGCAAATCAAATAAATCAAAAACAACTGAACCACAAGAATTAAAGAAACCAGTGGACAAGGTTCTTCCTTCTTCGAAGAAAAGTACTCCAACGCCAGCATCAAAGAATCATGTAGGCAGCTTGTCCACAAAAGGTGCAGCTGTCAAAGGCTCAAGTGCCAGTGTCACTTCTGCAAAGCTGAAAAGTCAAGCTACAGAAGAAGCTTGGTTGCCTTGGACTGAAAAGTACAGACCAAAGGTACCAAATGACATCATTGGGAATCAGTCAGTGGTTAAGCAACTTCATGATTGGCTAAGAAGTTGGAATGAGCAGTTTCTGAAAACTAGCAGCAAAAATGGGGGGAAGAAACAGAATGACTCTGGTGCTAAGAAGGCTGTTCTATTAAGTGGTACACCTGGTATAGGAAAAACTACAACAGCAAAGTTGGTTAGTCAGATGCTGGGTTTCAGGACAATTGAGGTTAATGCTAGTGACAACCGTGGAAAGGCTGATGCCAAAATTGGCAAAGGAATTGGTGGGAGCACTGCTAATTCAATAAAAGAGGTTATTAGTAATGAAGGACTTGGCCTTAATATGGAGCGCTCTCAGCATCCAAAAACAGTTTTAATCATGGATGAGGTGGATGGCATGTCTGCTGGTGATAGAGGTGGTGTGGCTGATCTTATTGCTAGTATCAAGATTTCTAGCATTCCCATAATCTGTATCTGTAATGATCGCTACAGCCAGAAGCTAAAGAGTCTTGTGAACTACTGCTTGCTTCTTAGCTTTCGGAAGCCCACAAAGCAACAGATGGCAAAGAGGCTATTGCATGTTGCAAATGCTGAAGGTCTTCAAGTTAATGAGATTGCGCTTGAGGAATTGGCAGAAAGAGTTAATGGAGATATGCGCATGGCACTTAACCATTTGCAGTACATGAGCCTCTCTATGTCAGTCATTAAGTATGATGACATAAGGCAACGCCTTCAGAGCAGTTCAAAAGATGAAGATATTTCGCCTTTTGTGGCTGTTGATAAGTTGTTTGGTTTTAATGCTGGGAAATTGCGGATGGATGAACGTTTTGATTTAAGCATGAGTGATCCTGATCTTGTTCCTCTGCTTGTTCAGGAGAACTATATCAATTATAGGCCAAGTTCAGCTGGGAAAGATGATAATGGTTTGAAAAGGATGAGTCTCCTTGCCCGGGCTGCTGAGTCAATTGCCAACGGTGATATTATGAATGTACAGATTCGAAGATATCAACAGTGGCAGCTCTCTCAAGCTAGCTCCCTTTCATCTTGTATAATACCTGCTTCTTTGTTACATGGGCAAAGAGAAACACTTGAGCAGGGAGAGCGCAACTTCAATAGGTTTGGTGGCTGGCTGGGAAAGAACTCCACTATGGGAAAGAATTACAGACTTTTAGAGGACATGCATGTCCATCTACTTGCATCTCGTGAATCTTATTTGGGCAGGTCGACATTGCGATTGGACTACCTTACTCTTCTTTCTAAGCAGTTGACCCATCCAGTACGAGTGCTGCCCAAGGATGAAGCTGTAGAGAAGGTAGTAAATTTCATGGATTCATACTCCATCAGTCAGGAAGATTTTGATACTATATTGGAGATATCCAAGTTCAAGGGGCATCCAAGTCCTATGGATGGAGTTCAGCCTGCTGTCAAAGCTGCTCTAACAAAGGCTTACAAAATAGGGACGGACTCACGTAAGATTCGGACAGCGGATATGGTGACTGTCCAGAAAAGAGATGGAAGCAGCTCACATGTGATTAAGACTGCAGATATGGTTCCTGGGACAAAGAAGGCCCTTAAGAAACGGGTTGCTGCAATGCTGGAACCAGTGGAAGAAAGTTTAGCAGAGGAGAATGGTGATGCATTAGAAGAAAATGAAGAGAATTCTTCAGACGCAGAAGACTTGGAAGACTCAGATAATACAGATAAAGGGCTGCAAGCAGATCTCCAAAGCCTGAAGTCGAAAGGCATTGAAGTACAACTGAACTTGAAAGGTTCTGAAAATTCGAGTGCCAAGAAGGGATCTTCAGCAAGAGGAAAACGCAGTTCTGAACCTGCAGAAAAGAAAGGTGGAGGACGGGGATCCGGATCTGCGTCCAAGAGGAAGAGATGA
Protein:  
MQSDIRKWFMKQHEKSSAGNGNAAKPKTAEKPAVAASHLDDSVKEGQESASRRKTSKYFASDKQNAKDAKEIEEFSAKRKAPMASKEIHGDVKPPPGKKVHKNEDDDNDEDFVDTTPRKVSTPSKKLKSGSGRGIARKSADVDESDEDDVIGTKSHSKPAGRGRGGKSGITAPGSRKGMVVDESDEDEPGDKESKSAKPGGRGRGGRGSSATPSGGRGRGGGGYGGFMNFGERKDPPHKGEKEIPEGATDCLTGLTFVISGTLDSLEREDAEALIKRYGGRVTGSVSKKTNYLVCDEDIEGRKSTKAKELGTAFLTEDGLLDMIRKSNKSKTTEPQELKKPVDKVLPSSKKSTPTPASKNHVGSLSTKGAAVKGSSASVTSAKLKSQATEEAWLPWTEKYRPKVPNDIIGNQSVVKQLHDWLRSWNEQFLKTSSKNGGKKQNDSGAKKAVLLSGTPGIGKTTTAKLVSQMLGFRTIEVNASDNRGKADAKIGKGIGGSTANSIKEVISNEGLGLNMERSQHPKTVLIMDEVDGMSAGDRGGVADLIASIKISSIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLLHVANAEGLQVNEIALEELAERVNGDMRMALNHLQYMSLSMSVIKYDDIRQRLQSSSKDEDISPFVAVDKLFGFNAGKLRMDERFDLSMSDPDLVPLLVQENYINYRPSSAGKDDNGLKRMSLLARAAESIANGDIMNVQIRRYQQWQLSQASSLSSCIIPASLLHGQRETLEQGERNFNRFGGWLGKNSTMGKNYRLLEDMHVHLLASRESYLGRSTLRLDYLTLLSKQLTHPVRVLPKDEAVEKVVNFMDSYSISQEDFDTILEISKFKGHPSPMDGVQPAVKAALTKAYKIGTDSRKIRTADMVTVQKRDGSSSHVIKTADMVPGTKKALKKRVAAMLEPVEESLAEENGDALEENEENSSDAEDLEDSDNTDKGLQADLQSLKSKGIEVQLNLKGSENSSAKKGSSARGKRSSEPAEKKGGGRGSGSASKRKR